library(tidyverse); library(patchwork); library(tidybayes)
library(brms); library(marginaleffects); library(viridis)
library(easystats); library(kableExtra)Load libraries
Set theme
theme_set(theme_bw(16))We’re first going to load all model objects stored in the stan folder to avoid rerunning all those pesky Bayesian computations.
Code
# Make a vector of file paths
file_paths <- list.files(path = "stan/",
pattern = "\\.rds", full.names = TRUE)
# Make a vector of file names
file_names <- gsub(pattern = "\\.rds$", replacement = "",
x = basename(file_paths))
# Read all models into a list
mods_list <- lapply(file_paths, readRDS)
# Assign file names to list elements
names(mods_list) <- file_names Rationale
Session info
sessionInfo()R version 4.4.1 (2024-06-14)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.5
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/Paris
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.4.0 see_0.8.5 report_0.5.9
[4] parameters_0.22.1 performance_0.12.2 modelbased_0.8.8
[7] insight_0.20.2 effectsize_0.8.9 datawizard_0.12.2
[10] correlation_0.8.5 bayestestR_0.14.0 easystats_0.7.3
[13] viridis_0.6.5 viridisLite_0.4.2 marginaleffects_0.21.0
[16] brms_2.21.6 Rcpp_1.0.13 tidybayes_3.0.6
[19] patchwork_1.2.0 lubridate_1.9.3 forcats_1.0.0
[22] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
[25] readr_2.1.5 tidyr_1.3.1 tibble_3.2.1
[28] ggplot2_3.5.1 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] svUnit_1.0.6 tidyselect_1.2.1 loo_2.8.0.9000
[4] fastmap_1.2.0 tensorA_0.36.2.1 digest_0.6.36
[7] timechange_0.3.0 estimability_1.5.1 lifecycle_1.0.4
[10] processx_3.8.4 magrittr_2.0.3 posterior_1.6.0
[13] compiler_4.4.1 rlang_1.1.4 tools_4.4.1
[16] utf8_1.2.4 yaml_2.3.9 data.table_1.15.4
[19] knitr_1.48 bridgesampling_1.1-2 htmlwidgets_1.6.4
[22] cmdstanr_0.8.1.9000 xml2_1.3.6 abind_1.4-5
[25] withr_3.0.0 grid_4.4.1 fansi_1.0.6
[28] xtable_1.8-4 colorspace_2.1-0 emmeans_1.10.3
[31] scales_1.3.0 cli_3.6.3 mvtnorm_1.2-5
[34] rmarkdown_2.27 generics_0.1.3 RcppParallel_5.1.8
[37] rstudioapi_0.16.0 tzdb_0.4.0 bayesplot_1.11.1.9000
[40] parallel_4.4.1 matrixStats_1.3.0 vctrs_0.6.5
[43] Matrix_1.7-0 jsonlite_1.8.8 hms_1.1.3
[46] arrayhelpers_1.1-0 systemfonts_1.1.0 ggdist_3.3.2
[49] glue_1.7.0 ps_1.7.7 distributional_0.4.0
[52] stringi_1.8.4 gtable_0.3.5 munsell_0.5.1
[55] pillar_1.9.0 htmltools_0.5.8.1 Brobdingnag_1.2-9
[58] R6_2.5.1 evaluate_0.24.0 lattice_0.22-6
[61] backports_1.5.0 rstantools_2.4.0.9000 svglite_2.1.3
[64] coda_0.19-4.1 gridExtra_2.3 nlme_3.1-165
[67] checkmate_2.3.1 xfun_0.46 pkgconfig_2.0.3